Fossil flowers from the early Palaeocene of Patagonia, Argentina, with affinity to Schizomerieae (Cunoniaceae)

Background and Aims: Early Palaeocene (Danian) plant fossils from Patagonia provide information on the recovery from the end-Cretaceous extinction and Cenozoic floristic change in South America. Actinomorphic flowers with eight to ten perianth parts are described and evaluated in a phylogenetic framework. The goal of this study is to determine the identity of these fossil flowers and to discuss their evolutionary, palaeoecological and biogeographical significance. Methods: More than 100 fossilized flowers were collected from three localities in the Danian Salamanca and Peñas Coloradas Formations in southern Chubut. They were prepared, photographed and compared with similar extant and fossil flowers using published literature and herbarium specimens. Phylogenetic analysis was performed using morphological and molecular data. Key results: The fossil flowers share some but not all the synapomorphies that characterize the Schizomerieae, a tribe within Cunoniaceae. These features include the shallow floral cup, variable number of perianth parts arranged in two whorls, laciniate petals, anthers with a connective extension, and a superior ovary with free styles. The number of perianth parts is doubled and the in situ pollen is tricolporate, with a surface more like that of other Cunoniaceae outside Schizomerieae, such as Davidsonia or Weinmannia. Conclusions: An extinct genus of crown-group Cunoniaceae is recognized and placed along the stem lineage leading to Schizomerieae. Extant relatives are typical of tropical to southern-temperate rainforests, and these fossils likely indicate a similarly warm and wet temperate palaeoclimate. The oldest reliable occurrences of the family are fossil pollen and wood from the Upper Cretaceous of the Antarctica and Argentina, whereas in Australia the family first occurs in upper Palaeocene deposits. This discovery demonstrates that the family survived the Cretaceous-Palaeogene boundary event in Patagonia and that diversification of extant lineages in the family was under way by the earliest Cenozoic.Fil: Jud, Nathan A.. Cornell University; Estados UnidosFil: Gandolfo, Maria Alejandra. Cornell University; Estados UnidosFil: Iglesias, Ari. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Wilf, Peter. State University of Pennsylvania; Estados Unido

Fossil moonseeds from the Paleogene of West Gondwana (Patagonia, Argentina)

Premise of the Study: The fossil record is critical for testing biogeographic hypotheses. Menispermaceae (moonseeds) are a widespread family with a rich fossil record and alternative hypotheses related to their origin and diversification. The family is well-represented in Cenozoic deposits of the northern hemisphere, but the record in the southern hemisphere is sparse. Filling in the southern record of moonseeds will improve our ability to evaluate alternative biogeographic hypotheses. Methods: Fossils were collected from the Salamanca (early Paleocene, Danian) and the Huitrera (early Eocene, Ypresian) formations in Chubut Province, Argentina. We photographed them using light microscopy, epifluorescence, and scanning electron microscopy and compared the fossils with similar extant and fossil Menispermaceae using herbarium specimens and published literature. Key Results: We describe fossil leaves and endocarps attributed to Menispermaceae from Argentinean Patagonia. The leaves are identified to the family, and the endocarps are further identified to the tribe Cissampelideae. The Salamancan endocarp is assigned to the extant genus Stephania. These fossils significantly expand the known range of Menispermaceae in South America, and they include the oldest (ca. 64 Ma) unequivocal evidence of the family worldwide. Conclusions: Our findings highlight the importance of West Gondwana in the evolution of Menispermaceae during the Paleogene. Currently, the fossil record does not discern between a Laurasian or Gondwanan origin; however, it does demonstrate that Menispermaceae grew well outside the tropics by the early Paleocene. The endocarps’ affinity with Cissampelideae suggests that diversification of the family was well underway by the earliest Paleocene.Fil: Jud, Nathan A.. Cornell University; Estados UnidosFil: Iglesias, Ari. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Wilf, Peter. State University of Pennsylvania; Estados UnidosFil: Gandolfo, Maria Alejandra. Cornell University; Estados Unido

Cretaceous-Paleogene plant extinction and recovery in Patagonia

The Cretaceous-Paleogene (K/Pg) extinction appears to have been geographically heterogeneous for some organismal groups. Southern Hemisphere K/Pg palynological records have shown lower extinction and faster recovery than in the Northern Hemisphere, but no comparable, well-constrained Southern Hemisphere macrofloras spanning this interval had been available. Here, macrofloral turnover patterns are addressed for the first time in the Southern Hemisphere, using more than 3500 dicot leaves from the latest Cretaceous (Maastrichtian) and the earliest Paleocene (Danian) of Argentine Patagonia. A maximum ca. 90% macrofloral extinction and ca. 45% drop in rarefied species richness is estimated across the K/Pg, consistent with substantial species-level extinction and previously observed extirpation of host-specialized leaf mines. However, prior palynological and taxonomic studies indicate low turnover of higher taxa and persistence of general floral composition in the same sections. High species extinction, decreased species richness, and homogeneous Danian macrofloras across time and facies resemble patterns often observed in North America, but there are several notable differences. When compared with boundary-spanning macrofloras at similar absolute paleolatitudes (ca. 50°S or 50°N) from the Williston Basin (WB) in the Dakotas, both Maastrichtian and Danian Patagonian species richnesses are higher, extending a history of elevated South American diversity into the Maastrichtian. Despite high species turnover, our analyses also reveal continuity and expansion of leaf morphospace, including an increase in lobed and toothed species unlike the Danian WB. Thus, both Patagonian and WB K/Pg macrofloras support a significant extinction event, but they may also reflect geographically heterogeneous diversity, extinction, and recovery patterns warranting future study.Fil: Stiles, Elena. State University of Pennsylvania; Estados UnidosFil: Wilf, Peter. State University of Pennsylvania; Estados UnidosFil: Iglesias, Ari. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte. Instituto de Investigaciones en Biodiversidad y Medioambiente. Universidad Nacional del Comahue. Centro Regional Universidad Bariloche. Instituto de Investigaciones en Biodiversidad y Medioambiente; ArgentinaFil: Gandolfo, Maria Alejandra. Cornell University; Estados UnidosFil: Cúneo, Néstor Rubén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; Argentin

The Plant Ontology facilitates comparisons of plant development stages across species

The Plant Ontology (PO) is a community resource consisting of standardized terms, definitions, and logical relations describing plant structures and development stages, augmented by a large database of annotations from genomic and phenomic studies. This paper describes the structure of the ontology and the design principles we used in constructing PO terms for plant development stages. It also provides details of the methodology and rationale behind our revision and expansion of the PO to cover development stages for all plants, particularly the land plants (bryophytes through angiosperms). As a case study to illustrate the general approach, we examine variation in gene expression across embryo development stages in Arabidopsis and maize, demonstrating how the PO can be used to compare patterns of expression across stages and in developmentally different species. Although many genes appear to be active throughout embryo development, we identified a small set of uniquely expressed genes for each stage of embryo development and also between the two species. Evaluating the different sets of genes expressed during embryo development in Arabidopsis or maize may inform future studies of the divergent developmental pathways observed in monocotyledonous versus dicotyledonous species. The PO and its annotation databasemake plant data for any species more discoverable and accessible through common formats, thus providing support for applications in plant pathology, image analysis, and comparative development and evolution

Reinterpretation of Paleoazolla: A heterosporous water fern from the Late Cretaceous of Patagonia, Argentina

Premise: Undoubtedly, fossils are critical for understanding evolutionary transformations in deep time. Here, we reinvestigate the microspores and megaspores of Paleoazolla patagonica, a water fern found in Late Cretaceous sediments of the Chubut Province, Patagonia, Argentina, which provides novel evidence on the past history of the water fern clade. The study was based on recently collected specimens and additional observations of the original material. Methods: Most specimens analyzed herein were obtained from new palynological samples collected at the Cerro Bosta and Cañadón del Irupé localities, La Colonia Formation. Samples were mechanically disaggregated and treated with hydrofluoric and hydrochloric acid. Spores were studied using standard light microscopy and scanning electron microscopy. We also reexamined the original materials. Results: The newly described characters of Paleoazolla include the presence of heterosporangiate sori composed of one ellipsoidal megasporangium surrounded by three to four oval microsporangia, megasporangium containing one hairy massula that encloses two trilete megaspores (rarely one or three), and microsporangia containing numerous microspore massulae with non-septate multibarbed glochidia and one trilete microspore per massula. Conclusions: The reinterpretation has revealed a novel set of characters for understanding the evolution of heterosporous water ferns. The presence of two megaspores in the megasporangium of Paleoazolla exposes serious gaps in the current knowledge on the evolution of monomegaspory in heterosporous water ferns, a fact that emphasizes the need of including fossils within phylogenies to elucidate patterns of character acquisition among water ferns.Fil: de Benedetti, Facundo. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; ArgentinaFil: Zamaloa, María del Carmen. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; ArgentinaFil: Gandolfo, Maria Alejandra. Cornell University; Estados UnidosFil: Cúneo, Néstor Rubén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; Argentin

A new cupressaceous wood from the Lower Cretaceous of central Patagonia reveals possible clonal growth habit

A new genus and species, Austrocupressinoxylon barcinense, based on remains of cupressaceous wood is described for the Lower Cretaceous of central Patagonia, Argentina. The studied specimens are silicified fragments of picnoxylic and homoxylic wood that exhibit a combination of characters not previously reported, therefore a new genus is erected. The characters are: 1- growth ring boundaries distinct, 2- transition from earlywood to latewood gradual, 3- axial parenchyma diffuse,4- radial tracheid pitting predominantly abietinean,5- cross-field pitting cupressoid, arranged in both cupressoid and araucarioid patterns, 6- rays uniseriate heterocellular, 7- end and horizontal walls of ray parenchyma cells smooth or slightly nodular, and 8- ray tracheids with smooth walls. The cross-field pitting patterns and the presence of ray tracheids are two traits of particular interest in the context of systematic affinities. The fragments were collected from two stumps found in life position attached to each other by a main root, consequently, the disposition of the stumps suggests a case of clonal growth by root suckering. This is the second report of such mechanisms in the fossil records worldwide and the first one for South America.Fil: Nunes, Cristina Isabel. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; ArgentinaFil: Bodnar, Josefina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo; ArgentinaFil: Escapa, Ignacio Hernán. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; ArgentinaFil: Gandolfo, Maria Alejandra. Cornell University; Estados UnidosFil: Cúneo, Néstor Rubén. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; Argentin

An Extension of the Plant Ontology Project Supporting Wood Anatomy and Development Research

A wealth of information on plant anatomy and morphology is available in the current and historical literature, and molecular biologists are producing massive amounts of transcriptome and genome data that can be used to gain better insights into the development, evolution, ecology, and physiological function of plant anatomical attributes. Integrating anatomical and molecular data sets is of major importance to the field of wood science, but this is often hampered by the lack of a standardized, controlled vocabulary that allows for cross-referencing among disparate data types. One approach to overcome this obstacle is through the annotation of data using a common controlled vocabulary or “ontology” (Ashburner et al. 2000; Smith et al. 2007). An ontology is a way of representing knowledge in a given domain that includes a set of terms to describe the classes in that domain, as well as the relationships among terms. Each term can be associated with an array of data such as names, definitions, identification numbers, and genes involved. Ontologies are fundamental for unifying diverse terminologies and are increasingly used by scientists, philosophers, the military and online web search engines. In an ontology, terms are carefully defined, allowing a wide array of researchers to (1) use terms consistently in scientific publications or standardized handbooks on quality/trait evaluations, and (2) search for and integrate data linked to these terms in anatomical, genetic, genomic, and other types of biological databases.This is the publisher’s final pdf. The published article is copyrighted by the International Association of Wood Anatomists and can be found at: http://science.naturalis.nl/media/337871/lens%20et%20al-2012%20iawa%20j%20plant%20ontology.pdf)

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies

The study of biodiversity spans many disciplines and includes data pertaining to species distributions and abundances, genetic sequences, trait measurements, and ecological niches, complemented by information on collection and measurement protocols. A review of the current landscape of metadata standards and ontologies in biodiversity science suggests that existing standards such as the Darwin Core terminology are inadequate for describing biodiversity data in a semantically meaningful and computationally useful way. Existing ontologies, such as the Gene Ontology and others in the Open Biological and Biomedical Ontologies (OBO) Foundry library, provide a semantic structure but lack many of the necessary terms to describe biodiversity data in all its dimensions. In this paper, we describe the motivation for and ongoing development of a new Biological Collections Ontology, the Environment Ontology, and the Population and Community Ontology. These ontologies share the aim of improving data aggregation and integration across the biodiversity domain and can be used to describe physical samples and sampling processes (for example, collection, extraction, and preservation techniques), as well as biodiversity observations that involve no physical sampling. Together they encompass studies of: 1) individual organisms, including voucher specimens from ecological studies and museum specimens, 2) bulk or environmental samples (e.g., gut contents, soil, water) that include DNA, other molecules, and potentially many organisms, especially microbes, and 3) survey-based ecological observations. We discuss how these ontologies can be applied to biodiversity use cases that span genetic, organismal, and ecosystem levels of organization. We argue that if adopted as a standard and rigorously applied and enriched by the biodiversity community, these ontologies would significantly reduce barriers to data discovery, integration, and exchange among biodiversity resources and researchers

Angiosperm leaves and cuticles from the uppermost Cretaceous of Patagonia, biogeographic implications and atmospheric paleo-CO2 estimates

The study of plant material from localities of Late Cretaceous age from southern latitudes is fundamental to improve our understanding of global patterns of angiosperm evolution, diversity, paleoecology, and biogeography. Herein, angiosperm leaf fossils of the recently discovered Cañadón del Loro locality, from the Maastrichtian portion of the Lefipán Formation, Patagonia, Argentina are studied. Leaf architecture was used to differentiate morphotypes, to describe them, and to make comparisons with other southern latitudes floras of similar age. Six angiosperm leaf morphotypes were described from 132 collected specimens; one of them, with exceptional preservation, was named Lefipania padillae gen. et sp. nov. and its cuticle anatomy and insect damage were also described. The Cañadón del Loro fossils represent a local assemblage of low diversity deposited in an upper delta plain. Biogeographically, L. padillae was widespread throughout the southern hemisphere during the Late Cretaceous, possibly favored by a warm climate and the geographical proximity of these southern landmasses. The morphotype with well-preserved cuticles clearly shows four insect damage types attributed to feeding. This morphotype was also used for estimating paleo-atmospheric CO2 concentration (pCO2), using a stomatal-proxy gas exchange model, which resulted in approximately 464 ppm. The estimated pCO2 is in agreement with previous estimations for this time interval and supports the hypothesis of a decrease of pCO2 towards end of the Cretaceous.Fil: Martínez, Camila. Cornell University; Estados UnidosFil: Gandolfo, Maria Alejandra. Cornell University; Estados UnidosFil: Cúneo, Néstor Rubén. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; Argentin

Azolla sporophytes and spores from the late cretaceous and Paleocene of Patagonia, Argentina

Premise of research. While Azolla has a rich fossil record based on dispersed megaspore apparatuses and microspore massulae, fossil sporophytes are relatively rare. In this contribution, we describe two fossil Azolla species based on both sporophytes and spores from Chubut Province, Patagonia, Argentina: Azolla coloniensis De Benedetti & Zamaloa, emend. Hermsen et al., and A. keuja Jud et al., sp. nov. Azolla coloniensis and A. keuja are the first fossil species of Azolla to be represented by vegetative structures (i.e., leaves, stems, and roots) from both South America and the Southern Hemisphere. Methodology. We examined sporophyte material of A. coloniensis from the Cañadón del Irupé locality, Upper Cretaceous, La Colonia Formation, and A. keuja from the Palacio de los Loros locality PL-2, Paleocene, Salamanca Formation. Spores of A. keuja were obtained from a sporophyte specimen and its surrounding rock matrix. Material was studied using standard light microscopy, epifluorescence microscopy, and scanning electron microscopy. Fossils are held at the Museo Paleontológico Egidio Feruglio, Trelew, Chubut Province, Argentina. Pivotal results. Azolla coloniensis produced many-floated megaspore apparatuses and microspore massulae with anchor-tipped glochidia, placing it in the fossil Azolla section Florschuetzia. Azolla keuja sporophytes are structurally similar to those produced by the extant African species A. nilotica and the Late Cretaceous–Paleocene North American species A. schopfii in overall size, growth form, leaf structure, and production of fascicled roots; while all three taxa produce similar microspore massulae, the structure of their megaspore apparatuses differ. Azolla keuja cannot be assigned to any section of Azolla. Conclusions. Azolla coloniensis and A. keuja are important because they provide two new organismal concepts for extinct species of Azolla. Our inability to fully classify A. keuja to section, in combination with the great morphological diversity of fossil Azolla, indicates that a comprehensive reevaluation of phylogeny and taxonomy that incorporates both extant and fossil species is needed.Fil: Hermsen, Elizabeth J.. No especifíca;Fil: Jud, Nathan A.. Williams College; Estados UnidosFil: de Benedetti, Facundo. Museo Paleontologico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Gandolfo, Maria Alejandra. Cornell University; Estados Unido